rs48470091 SNP Detail

Summary

• ID
  rs48470091
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123620503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TAAGAAGGGG CCAGAGAGAA CAGGAAGCTA TCTAAGCTAT
  CTATTTGCCT GTCCTAGAAA AAGAAACAGT AAACTGTCTA CAACATCAGG TGTGAGCTAA
  S
  TAGCAGGAAG TAGGCAAACA GGGAGGGAGT GACAAATGGA AGTTATGTCC TGTTCTTCCA
  CTAGGTAGCC TCTTAAGTTA CCAAAGACTT TTCTTTCATA G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137081804	ENSMUSSNP4127444	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48470091					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123620503 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	616 bp downstream
Tssr92158	transcription start site region 92158	631 bp downstream
Tssr92159	transcription start site region 92159	639 bp downstream
Tssr92160	transcription start site region 92160	1032 bp downstream
Tssr92161	transcription start site region 92161	1049 bp downstream