rs48470660 SNP Detail

Summary

• ID
  rs48470660
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29149922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGGGC TTCCCATGTG
  CTCAGTAAGG CCTCTGCCAC CAGAGCTACA ACCCCAGGTC CCCTCCTCTT TGTTTGAGAT
  TCCTGCTGGC CTGCTGGCTG ATGATTTTCC AGCTGGCTGG CTTCCAGCTC TTGGAGTTGT
  CTGGGCAGAG GCCAGAGCTA GGGAAACCAG AAGCTGTTTG GCCCAGCTGG AGAGCTCAGT
  S
  AGGGGTGTCC CCAAGGAGGC CCCACTTCCT GGTATCCTGA GCAGGGCTGG ATGAGAGGTC
  ACCTCCCTCT TCTCTGTTAT GTGACCCTCC ATTACTGCTC TCTCCTCTGC TCGGGTGAAC
  CTTGTTTACC AGTTACCACG GTCCTTGGCT TCTCGTGTGT CACTCTGATC CGAGACTCTG
  ATTGATGGCT TGGTCCCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559603	NES16576376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48470660					SNP	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559603	NES16576376	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29149922 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	within coordinates
Rr524716	regulatory region 524716	320 bp distal
Rr524717	regulatory region 524717	395 bp distal
Rr524718	regulatory region 524718	within coordinates
Rr524719	regulatory region 524719	303 bp proximal
Rr524720	regulatory region 524720	670 bp proximal