rs48471279 SNP Detail

Summary

• ID
  rs48471279
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58884543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA GAAATAGCGG AGGCCTCAGA
  A
  GCATGAGAAA TGCATGAACA GCTGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132221003	ENSMUSSNP5145449	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48471279					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58884543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	527 bp proximal
Gm73767	predicted gene, 73767	1918 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	539 bp downstream
Tssr108185	transcription start site region 108185	1952 bp upstream