rs48471282 SNP Detail

Summary

• ID
  rs48471282
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52208985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCCCAAG AACATCCATT TCTTGAGGCT GACAGCAGCT
  CTTGTGTCTC ACATCCTTAC GGAAGTCTAG TGGGATGAAC CTCACTTTCT GTTCTCAGTA
  S
  TTAGATTTAG CTGGGTCGGC AGAAAGGAGC AGAGGGTTCC ATCCCTGCTC TGGCTTTTGA
  GTTTCACTGA GAGCAGGGGA GCAGATTGAA TTTACAATAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60261853	NES15764138	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48471282					SNP	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261853	NES15764138	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52208985 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	1016 bp proximal
Rr405357	regulatory region 405357	1838 bp upstream
Tssr148690	transcription start site region 148690	1963 bp downstream
Tssr148691	transcription start site region 148691	1993 bp downstream