rs48471451 SNP Detail

Summary

• ID
  rs48471451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96078091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTAGGGCT GACCTGGGGT TGGACGAAGT
  TGCCGTGGCC CTTCGATCAC CTTAGCGTCC ACGCCGGAGT AAAAATTAAA ATCCAGCCCC
  AGCTTCCCCA GAAGGTTTGC CCTTCCACCC GGAGTTCCGA TGGGCCTCGC GGGCACAGAG
  R
  CCAAATATAG TGGAATGGAC TTTTCTTGGA AACGAAATGT GTGCACACTA GGAACCGGAA
  CCCTCAGCCC AACACTGAAA CTCAGAAAAA AATCTAGTCA GTTGCTCTTA TCCACTGGGC
  AGGGAGTAAG GATGCAGACT CACACGCCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60651688	NES16269110	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G		A	A	A		A
ss322811398	CHEV_8_97875363	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48471451					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651688	NES16269110	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96078091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	144 bp proximal
Mmp15	matrix metallopeptidase 15	833 bp upstream
Rr668225	regulatory region 668225	1867 bp distal
Rr668226	regulatory region 668226	315 bp proximal
Rr668227	regulatory region 668227	816 bp proximal
Tssr78982	transcription start site region 78982	773 bp upstream
Tssr78983	transcription start site region 78983	795 bp upstream