rs48471686 SNP Detail

Summary

• ID
  rs48471686
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81933750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT GTTACTTTTG ATGCAGGGAA
  K
  AAAAATCTCA AGCTTTCTTT GCCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133338057	ENSMUSSNP4653085	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G		G
ss321840572	CHEV_6_81906763	CHEVERUD	SCREENING_POP	f	SNP				T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48471686					SNP	T	T	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81933750 () rs orientation: forward

Symbol	Name	Function Class
Gcfc2	GC-rich sequence DNA binding factor 2	within coordinates
Mrpl19	mitochondrial ribosomal protein L19	1082 bp downstream
Rr632566	regulatory region 632566	163 bp distal