rs48472464 SNP Detail

Summary

• ID
  rs48472464
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73604275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTCCCCCA GTGGAGCAAG GGGGCAGGGA GCTGGGAGAA
  CAGAGCCAGG CAGGGCTGGG AGCCGGGTGT GTGGCTGGAG TGGGGTTGAG ACATTTCATC
  C
  AGGAGCCATC TGACCGTCTG TCCACCCCTC CCCCGCCCAG AGGAGGCCCA ATAGTGCTGA
  TCACAGGACT CAGGCAAAGC CACTTGGGGC TCCATCCCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148118192	ENSMUSSNP4811200	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48472464					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73604275 () rs orientation: forward

Symbol	Name	Function Class
Ptp4a3	protein tyrosine phosphatase 4a3	within coordinates
Rr311850	regulatory region 311850	within coordinates
Rr369950	regulatory region 369950	95 bp upstream