rs48473921 SNP Detail

Summary

• ID
  rs48473921
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:92897835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC TGTGTTTTAC CCCTTGCCTG
  A
  CTCAGATAAT ATTCACCCCG TTATT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147336968	ENSMUSSNP6920477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323397973	CHEV_10_92524718	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48473921					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:92897835 () rs orientation: forward

Symbol	Name	Function Class
Cfap54	cilia and flagella associated protein 54	within coordinates
Rr217502	regulatory region 217502	635 bp distal
Rr223960	regulatory region 223960	1367 bp distal
Rr229468	regulatory region 229468	1668 bp proximal