rs48474038 SNP Detail

Summary

• ID
  rs48474038
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33151480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATCTTCT GTTTGTTCTA
  TTTCTCTGAA GTACCCAACT TATTATAGTC ATATTCTAAC AAGACGTGCT GAAGGGTTAG
  GATTTCAATG TCTCTTTTTG GGAGTCACAA TTTAGCCCAC AGGAGAAAGA CGCATTGGTT
  ACTTTTTTTT TTTTTTAAAT CACCCTTACA AGGAGGGAAA TTTTATTTGG CTCGTGGTTC
  M
  TTGAGGGGAA GGCATGATGG CTGGGACAGT CTTGGTCTAG AGCTAGGGGA CTTGGTAGCA
  TGATTTCCTT GCATCTCGGC AGCCGACAGG GAAGTAGAGA GCTCAGGCTG GAAGCAGAGT
  TAGCTCACAA ACCTCAGTAG TCACTTAGTC TGCTAGCTGT GCCCAGGTCC AAGATATTCA
  CAGCCTTCAA AAACAGTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137582070	ENSMUSSNP6796085	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48474038					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33151480 () rs orientation: forward

Symbol	Name	Function Class
Gm59430	predicted gene, 59430	1232 bp upstream
Rr464869	regulatory region 464869	742 bp proximal
Rr464870	regulatory region 464870	1243 bp proximal