rs48475028 SNP Detail

Summary

• ID
  rs48475028
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132617483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCACATGGCT TTGCCCCGGA GTCTGATCCC TCCCCCCACC
  CCATCCTTGC CTGGGTCTCT CTCATCCCTC TTGGGGGAGC CTCTGACCAG TGTCCTCTTC
  A
  CTAAGTGCAA GAGAAGCAAA CTGGAACTAC TTAGCTGTCC ATCCAGTCCT AATCCCTCTG
  CGAGAGACAT TACATTAATC TAGCAGCACA CAGCTACAAC A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145938504	ENSMUSSNP6915459	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48475028					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132617483 () rs orientation: forward

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr656751	regulatory region 656751	16 bp distal
Tssr75241	transcription start site region 75241	425 bp upstream
Tssr75242	transcription start site region 75242	272 bp upstream
Tssr75243	transcription start site region 75243	235 bp upstream