rs48475616 SNP Detail

Summary

• ID
  rs48475616
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:16860972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACG CGGGTGCACT GCGCATGCGG
  G
  AAGATGGCCG GCCAGGGAAC CTGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss137196018	ENSMUSSNP5082560	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323920175	CHEV_12_16817777	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48475616					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16860972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4441	CpG island 4441			within coordinates
E2f6	E2F transcription factor 6			mRNA-UTR
				Noncoding-Transcript-Variant
Rr463370	regulatory region 463370			within coordinates
Rr463371	regulatory region 463371			17 bp proximal
Tssr112858	transcription start site region 112858			within coordinates
Tssr112859	transcription start site region 112859			8 bp upstream
Tssr112860	transcription start site region 112860			1420 bp upstream