rs48475680 SNP Detail

Summary

• ID
  rs48475680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84355279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTTTAT TTCCTCAGAC
  ATTCTTTTGA AAACATGCTC TAATGTCTTT CTTGCCTAAG ACCAAATATA TAAGACAGAT
  CTAAAACCCT TTCACAGCTA CACAGTGTGT TGCTAAGCAT CCTCCTAGCG TCTTCGCCAG
  TAGCCTTGTT CGGAGTAAGC AGCTTTATGC TTCCTTCTTG TAAGCAACCT CATTCCTTCA
  Y
  AGTGTAGAAA TGAAAAATGT GCACTATAAC CTCATCAGAT TTCTTACAGG AACCCAGGTT
  ACGGCAGAGA GCCGCAGTGC CAGTCTCTAG GCTGTCTGCG GGGCGGCGTG GTGAGGGCTG
  TCTGCGGGGC GGCGTGGTGA GGGCTGTCTG CGGGGTGGCG TGGTGAGGGC TGTCTGCGGG
  GCGCCGTGGT GAGTTGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60500614	NES16526870	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48475680					SNP	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500614	NES16526870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84355279 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	within coordinates
Rr404934	regulatory region 404934	1266 bp upstream
Rr518505	regulatory region 518505	38 bp distal
Rr518506	regulatory region 518506	within coordinates
Rr518507	regulatory region 518507	1254 bp proximal
Rr518508	regulatory region 518508	1385 bp proximal
Tssr139145	transcription start site region 139145	1223 bp downstream