rs48475681 SNP Detail

Summary

• ID
  rs48475681
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88115776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGAAAC TTGTGCTGCC
  AACAGGACGA GAGTGTTAAT AACTTTTAAC AATCTTCCTG TGGAAATCAA TTTGAGTTAC
  AAAGCACCAT CATATTGTTT CCCAATTTAC ATCTCCTCCT TCAGCATGAT CCTTTCGGTG
  TATGAAAATG TGCTTGCTTT AGCCTCCACA ACCATTAGGC AAAGCAAATT CTGGAAACTG
  M
  GTATTAGTAT CAACTGGAAA GAAAGCTAAA TGAATCATTC ACCTCAATGG AGGGAGGCAA
  TAGACTCAGA ATTCTTAGAC TACTAAAAAG GAGGGAGAAA AAGAAAGAAT TTCAAGATGG
  ATTTTCTTAA TATCTGTCCC AGATTCAACT TTTAAAACAA ATAGGCGGAA CTCTTAGTTA
  TCTTAGATCT TAAAAGATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61194222	NES16700736	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs48475681					SNP	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194222	NES16700736	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88115776 () rs orientation: forward

Symbol	Name	Function Class
1700066N21Rik	RIKEN cDNA 1700066N21 gene	within coordinates
2310003L06Rik	RIKEN cDNA 2310003L06 gene	1542 bp upstream
BC051076	cDNA sequence BC051076	1565 bp downstream
Gm28434	predicted gene 28434	1600 bp upstream
Rr378253	regulatory region 378253	1062 bp upstream
Tssr46962	transcription start site region 46962	1538 bp upstream