rs48476448 SNP Detail

Summary

• ID
  rs48476448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:92088109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA GAGCTATGTA TAGAAGACTA
  Y
  ACATAATTAT ATCCTACTTA TTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145570196	ENSMUSSNP2328398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322791499	CHEV_8_93885380	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48476448					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92088109 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	Intron
Rr667523	regulatory region 667523	1990 bp proximal
Tssr78731	transcription start site region 78731	1780 bp upstream