rs48478256 SNP Detail

Summary

• ID
  rs48478256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152949735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTC CATTCTCTAG AACACACAAG
  Y
  GCGCGCGCGC GCGCTCTCGA GATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147984236	ENSMUSSNP1403986	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320564070	CHEV_2_152933551	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48478256					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152949735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	630 bp proximal
Hck	hemopoietic cell kinase	653 bp upstream
Rr567550	regulatory region 567550	within coordinates
Rr567551	regulatory region 567551	376 bp proximal
Rr567552	regulatory region 567552	692 bp proximal
Rr567553	regulatory region 567553	856 bp proximal
Tssr20863	transcription start site region 20863	142 bp downstream
Tssr20864	transcription start site region 20864	106 bp downstream
Tssr20865	transcription start site region 20865	659 bp upstream
Tssr20866	transcription start site region 20866	674 bp upstream
Tssr26882	transcription start site region 26882	1203 bp downstream