rs48478313 SNP Detail

Summary

• ID
  rs48478313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25759074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA GAGGTTGAGA CACAGCAGTC
  K
  GAGTTAGAGC CTCAGAGGTC AGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147013872	ENSMUSSNP2697278	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323277632	CHEV_10_25602982	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48478313					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25759074 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	497 bp upstream
Gm66740	predicted gene, 66740	200 bp upstream
Rr218979	regulatory region 218979	74 bp distal
Rr218980	regulatory region 218980	127 bp proximal