rs48478561 SNP Detail

Summary

• ID
  rs48478561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100909288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGATCCA GTGTACTTTT
  TGGCTTCACG AGCACAAACA TACAGCAGGC AAAATACAGG CACATAAAAT ACAAATAAAT
  ATAATTTTAA AACAAATAGC ACTCATCAGC AAACTCACGA AGCTGTTTGG AAACGAAGTG
  ACTTACTTGT GTCGATCATG GACTTATATT CTAAGAGCTG CTGTTTTGTC TGAGCTCTCA
  R
  CCTGAAAATG GAAAAAGAAG ACAGATAGGA ATTTATGGAC GGTGGTTATA GTCATCCTGC
  AATAAATGAA ATGGCTTCAA AGTCTTCTCA TGTAGCCTCG CTTTATTTAA AATAGTTGGC
  AAGACGGCGA CATAAAATGG ATGACAGTGG GGATACAGCA CCTTGGAGAA AAAGTGAAAA
  ATGTAATTCT TGCACATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52685773	NES15536563	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48478561					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685773	NES15536563	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100909288 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Rr280869	regulatory region 280869	1712 bp proximal