rs48478865 SNP Detail

Summary

• ID
  rs48478865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGTCTG GTAATGTACT
  GAACACATAC ATAGCGCAGT TATAAGAAAT GTATGAGACC TTCCTTGTCT TTGCTCTGTG
  TGTAAGACGT GTCCCCTGCA CCTGTATAGT GGCTGTGGCT TGAATGACTC TCAAAGTTAC
  TTCTATACAT ACCTCTATGT CCATTATCGA ATCAGCTCTT CTGACAATTG GAAAGAACTC
  S
  TATTCTAAAA GGCAATGGAT TCCTTAGATC CTTTCACCTT ATTGTATCCT TGTAGGGAAA
  TGCAAAATTT TAGAAACGAT TCTAATAAAC GAATCTTCCT AAGTAAATCC TTTTCAATTT
  CTTTTAATAT TCGAGATTTG AACTTATGTG TTGGATTTGT TAGTTGCTAT TTGTCTATGT
  AACCGCCTTG TGTCCATTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014975	ENSMUSSNP3734851	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48478865					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	315 bp proximal
Met	met proto-oncogene	800 bp upstream
Rr626799	regulatory region 626799	310 bp proximal
Rr626800	regulatory region 626800	474 bp proximal
Rr626801	regulatory region 626801	517 bp proximal
Rr626802	regulatory region 626802	1049 bp proximal
Tssr55050	transcription start site region 55050	432 bp upstream
Tssr55051	transcription start site region 55051	555 bp upstream
Tssr55052	transcription start site region 55052	749 bp upstream
Tssr55053	transcription start site region 55053	826 bp upstream
Tssr55054	transcription start site region 55054	885 bp upstream
Tssr55055	transcription start site region 55055	901 bp upstream
Tssr55056	transcription start site region 55056	927 bp upstream
Tssr55057	transcription start site region 55057	1092 bp upstream
Tssr55058	transcription start site region 55058	1132 bp upstream
Tssr55059	transcription start site region 55059	1171 bp upstream