rs48479665 SNP Detail

Summary

• ID
  rs48479665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10443096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTGTCT AGTGGCACCT
  TCGCGTATAT CCTTCTGCGG ATACATGTGG ACACAGATGT CTTTATTCTC ACAGCATAAC
  TTCCTGTTTA TTAACTGAAT TCCATAGGTG ATGGATTTGA GTGTGATCGA CTGATGTTTT
  CCTGTATTAT AGTCAATAAT TGGGAAGTTT TCTCTGTTTG AGTTCATTTT AAAGCCATGT
  R
  CCAGAGTGCC TTCCCATCCC CCTCAAGCCT CAGCTTGCAG GATAACTTGG GTGGCAGGAG
  AGGAGTAAGC ATAGTCCTGT GCTTACCGTA GTCTCCGGGA GCCCACTAAT AAGTAGCGCC
  ATTCATTGCT CATCTCGAGT GCGTAATAAC TCCATGCTCT CTCACATATG TGCTACCCAA
  GACTATTGAT TAGCAATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146291720	ENSMUSSNP3870310	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48479665					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10443096 () rs orientation: forward

Symbol	Name	Function Class
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16091	transcription start site region 16091	1590 bp upstream