rs48479734 SNP Detail

Summary

• ID
  rs48479734
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118264921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC ACCCACCACT ATGGTAAAAG
  T
  AGGCCCTTCA GTGTTAAAGG CACCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147307449	ENSMUSSNP3079780	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48479734					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118264921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	1156 bp proximal
Med8	mediator complex subunit 8	1613 bp upstream
Rr398422	regulatory region 398422	1436 bp upstream
Rr598388	regulatory region 598388	1076 bp proximal
Rr598389	regulatory region 598389	1539 bp proximal
Rr598390	regulatory region 598390	1653 bp proximal
Szt2	SZT2 subunit of KICSTOR complex	within coordinates
Tssr1279	transcription start site region 1279	1661 bp upstream
Tssr38654	transcription start site region 38654	1607 bp upstream
Tssr43049	transcription start site region 43049	1495 bp downstream