rs48479867 SNP Detail

Summary

• ID
  rs48479867
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:45605416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCTGAG TTTTTCAAGT
  CTGTGACACC TGGCTGCCCC TGAAGGCATT TCATTTTTCT CCCTTTAATT ATTTTTATCA
  TCCACTAAGA CCAAGCCTTT GGGTTTCCTG CCTTCTTTCC CGTAAAGTAA AGCCTTCAAA
  TTTGTTAATT TTATAACTTT ATTTAACACA CAGGGTTTTG GTAATAGAAA TAACCACTTG
  W
  ATAATCACTT CTGCTTATGA TGGAACTGAT AACCAGGACC TGGGTCTGAG TCAGCCCTGT
  GCCTCATCAG TGTCTGATGC AGCATCTTGA ACTTGAAGAG ACAGAATACA TTTCTGAATT
  GGATTTATAA TTCTGAGTAA TCTTCGGTCA TCCTAAAAAT CAGGTATTCT TCAGGAAGTC
  ACCAGTTTAC TCATTTTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52410619	NES15387178	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48479867					SNP	T	T	T	T	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52410619	NES15387178	PERLEGEN	MM_PANEL	f	SNP	A/T