rs48479935 SNP Detail

Summary

• ID
  rs48479935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58371691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGAGTT GGAGGCCAGC
  CTGGTCTACA AAGTGAGTTC CAGGACAGCC AGGGCTATAC AGAGAAACCC TGTCTCGAAA
  ACAAAAAACA ACAACAAAAC AACAACAAAA AGCTTTTGTG TCCTAGAAAA GGGGGGACAT
  CTTTTTAAGT CATTTTGTGA AGCCAGCAAA ACTTTAATCT CCACTTCAAG CATCTGCACA
  R
  TGGAGAAAAT AATAGGTTGG CAGGGCAGCA TCAGGGGCCT TGAGTGCATG TGCACAGCAT
  GTAACATGCC TGCTATGTAT TCCACATGCA CTAGTTGTTT TACGCGGTCA CACCAGGATC
  CAGGTTGAAA TCTCTGTCTC ACTGAACCAG ACATCTAGAA TGGCATCCCT AGGACAAAGA
  AGGGGAAGGA AAAGGTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61405174	NES16791693	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48479935					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61405174	NES16791693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58371691 () rs orientation: forward

Symbol	Name	Function Class
4930461G14Rik	RIKEN cDNA 4930461G14 gene	within coordinates
Gm32768	predicted gene, 32768	within coordinates
Gm32820	predicted gene, 32820	1536 bp upstream
Tssr89910	transcription start site region 89910	1582 bp upstream