rs48481585 SNP Detail

Summary

• ID
  rs48481585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119012380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGGCCCT GCTATGGATC
  CCATCGTTGC TTTGGAAGCA GCTCCCCACC TCTCCAGGGC TCTAACTATC CCTAAGGCAG
  AGAAGGTTGT GTGCCTCCTA ATTTCGCAAG GTGGGGCAGA GCACACCTGG GTAGAAAGAT
  CCAGACAGAT CCTTCCTGTC CTCTAATGCT AGTAGACCCA CCATGGGCAA AGCTGAGCTT
  Y
  CAGGCTCTCC ACAGTAGAAG AATCTATTAC CATCATCAAC CCTGGACCTG CTGGGTGAAC
  AAGGCAGCGT GCAACAGGCA GCCCTAGGCA GTGGATTTCA CAAGTCCCGC CTCTCTGGGA
  GCGGTTGGCA TCTGGGGCAT GGACTCCTGC CTTACCCGGG ACTTTTCTAG TTCTCCTGTC
  TTAGTATGTA TTAGGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60667031	NES16246333	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48481585					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60667031	NES16246333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119012380 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	within coordinates
Cpgi21109	CpG island 21109	952 bp distal
Rr382714	regulatory region 382714	within coordinates
Tssr79652	transcription start site region 79652	1977 bp downstream
Tssr79653	transcription start site region 79653	1903 bp downstream
Tssr79654	transcription start site region 79654	1874 bp downstream
Tssr79655	transcription start site region 79655	1838 bp downstream