rs48482742 SNP Detail

Summary

• ID
  rs48482742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29148859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCCAGGG CTACACAGAG AAACCCTGTC TGGAAAAAAA
  AAAAAGAAAG AAAGAAAGAA AAGAAAACCA AGATAGTTCT GTCCACTCCC CACAATAAAA
  R
  AGTGTCAGGA GAGGATGAGA AAAGTGCTCC CCTGGAGATA CTGAAGTGCT CCCCTGGAGG
  TGCCAAGGTG GCACAGGGAT TGGGGGGAGC ACAGTCAAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559613	NES16576389	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48482742					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559613	NES16576389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29148859 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	191 bp upstream
Rr524716	regulatory region 524716	243 bp proximal
Rr524717	regulatory region 524717	647 bp proximal
Rr524718	regulatory region 524718	744 bp proximal
Rr524719	regulatory region 524719	1366 bp proximal
Rr524720	regulatory region 524720	1733 bp proximal