rs48484598 SNP Detail

Summary

• ID
  rs48484598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156055808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATATGAT AGCTGGTTTG
  TGGGATCACG TGTGAGAAAT TAAAGGTTGC ATCTAAAGAG ACTCCCATCT CTGTCCCCTT
  GGCTGTGTAC TCTGGTGCTC AAGACATACA GCTCAGGCTA TGGCTATTTG ACTTGACGAG
  GGGAGACATT CCCTCAGAAG AGGTTTATCA TTTTAATATC ACATACAATG GACTGGGTTT
  W
  AAAAAGACTA TTACTATTAT TTGTGGGGTG GTGGTGGTGT TGGAGCTTAT TCATGAATGT
  GGAGGCCAGA AGAAGGCATT GCATATCCTC CATCACTGTC TGCTTTTCCC TTTGAGGCAC
  AGTCTCTCCC TGAACCTGGG GCTTACATTT TCTTGGCTAG GCTGGTAGAC ATCAATTTTT
  AACCATCCTC ATGTCCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60330235	NES15828261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs48484598					SNP	T	T	T	T	A	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330235	NES15828261	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156055808 () rs orientation: forward

Symbol	Name	Function Class
Gm38113	predicted gene, 38113	945 bp upstream
Rr421145	regulatory region 421145	1002 bp distal
Rr421146	regulatory region 421146	1095 bp proximal
Rr421147	regulatory region 421147	1233 bp proximal
Rr421148	regulatory region 421148	1381 bp proximal
Rr421149	regulatory region 421149	1501 bp proximal