rs48484806 SNP Detail

Summary

• ID
  rs48484806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87458656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCAGG CCTGCGCTCT
  CCCTGTGTAT TCCAGTGCTG TGAACTTGGC TCCTGGGAAG CTGGGTCACA CCTGGTTTGT
  ACTGAATCTC CACCTTGCTT TGAGTCCAGA TCCCAGGCGG GTTTGTTGGA TGGGGAGTCT
  GGAAAATCAA GTAATTCAGG ATGAAGGATT TAGTGGATGA AAGAACTGGG CTTGAGTCCT
  Y
  AGTCCCAAGT CCCTGATTTT GTACTCTTAG CATCTGCAAC GTGGCCATAA AACAGTGCCC
  TCCCCACAGT GTGGTAGAGG TGAAGCAATC TCAGCACCAG GGAGGCAGAG GCAGGCGGAT
  CTGTGAGTTC GAGGCCAGCC TATAGCCTAC AGATAGAGTT CCAGGACAGC TAGAACTACA
  GTACAGGGAA ACTCTGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61664504	NES17606333	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48484806					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61664504	NES17606333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87458656 () rs orientation: forward

Symbol	Name	Function Class
Rr258424	regulatory region 258424	856 bp distal
Rr258425	regulatory region 258425	1145 bp proximal
Rr268858	regulatory region 268858	within coordinates
Rr268859	regulatory region 268859	1170 bp proximal
Rr387583	regulatory region 387583	610 bp downstream