rs48485580 SNP Detail

Summary

• ID
  rs48485580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40122540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTCAAA CTTAGTAGTG
  ACAGTAGCAA GCCTCAGCAG GACCCATGGA ACAATGACTG CTTCTCCTGT ATCCCTCCAT
  CTCCATTCAT GGGCCCAGCA GCAATAGAAT GTTCAGTTCA ACTTCCCCAC CAGTGCATGG
  GAAATGACCA AGATCCTTTG AGGTTCAAGA TGCCTGTTAC CCAAGATGCT TGTTGCAAAT
  R
  CTGAGGTAGA GACTCCTCCT CAATTAGACC CAATGTGGTT CTGGCTCAGA AACCAGAAGC
  CACCCATGGA AAACCTGTGG CAAGGTACTT TTAAGTGACA TGCAGCCCAG AGAGTGGAGG
  AAGGTGACTG GAAGACAGTA TGTGTGAGCC ACCAACATCA TGCATGCATG CCCAGTTTGA
  GGGGGTGGTC TGAACTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60723915	NES16366464	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48485580					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60723915	NES16366464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40122540 () rs orientation: forward

Symbol	Name	Function Class
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	1332 bp upstream
Rr29353	regulatory region 29353	1860 bp proximal
Rr36419	regulatory region 36419	1952 bp distal
Tssr62	transcription start site region 62	1330 bp upstream
Tssr6411	transcription start site region 6411	1353 bp upstream
Tssr6412	transcription start site region 6412	1384 bp upstream
Tssr6413	transcription start site region 6413	1395 bp upstream
Tssr6414	transcription start site region 6414	1818 bp upstream