rs48486342 SNP Detail

Summary

• ID
  rs48486342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191712980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTCAC AAACATTCTG
  GGTGGTGTGC GGCATGGTGT GTCAACCCTG TGTGTAGATG AGGAACTGAA GGCTTGGATG
  GTCAGGATAG GATGTGACAG TGAGGTCTCC ATGGAGGTTT CCTGAGTGTC CTCTCAGATG
  GCCACACGCT GAAGACAGAG GTGCCTTCCA TCCAGGAGTG CAGTCTCCCG TGGAAGCCTC
  R
  CAGTGGCTCT CTCTAGAGAC GCTCCACTCA GACTCCAAAG TGTAATCACA AGCATACGCC
  ACCATGCCTA TCCTTGAAAG GGCTTCTTGA GGGAGCATCG CAGCTAGAGC AGTGGAAGGC
  ACGGCCCAGG GCCCAGCAAT GCTGAGACCT CAGGCTGGCC CAGCGTACTG CCTGTGCCTG
  AAGGTGGAGA ACCCCATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60361393	NES15865039	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48486342					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361393	NES15865039	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191712980 () rs orientation: forward

Symbol	Name	Function Class
Rd3	retinal degeneration 3	Intron
Rr426278	regulatory region 426278	1498 bp distal
Rr426279	regulatory region 426279	283 bp proximal