rs48487894 SNP Detail

Summary

• ID
  rs48487894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98761666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TATTGCTCTG TGGGTCCCTG
  Y
  ATATTTTTCC ATCAGTTCCT GGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135527768	ENSMUSSNP3547704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320845375	CHEV_3_98658273	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48487894					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98761666 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	701 bp proximal
Tssr30852	transcription start site region 30852	1784 bp downstream
Tssr30853	transcription start site region 30853	1619 bp downstream
Tssr34707	transcription start site region 34707	1388 bp upstream
Tssr34708	transcription start site region 34708	1207 bp upstream
Tssr34709	transcription start site region 34709	1060 bp upstream
Tssr34710	transcription start site region 34710	1003 bp upstream
Tssr34711	transcription start site region 34711	1716 bp downstream