rs48487917 SNP Detail

Summary

• ID
  rs48487917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153065888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG GGACAGTCAG CACTTGTCAA
  R
  CTTTGAAGAG CTAGGCCTCC AACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147988185	ENSMUSSNP5515057	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48487917					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153065888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1022 bp proximal
Rr567581	regulatory region 567581	1955 bp distal
Rr567582	regulatory region 567582	1588 bp distal
Rr567583	regulatory region 567583	1463 bp proximal
Tspyl3	TSPY-like 3	within coordinates
Tssr26887	transcription start site region 26887	1065 bp downstream
Tssr26888	transcription start site region 26888	1409 bp downstream
Tssr26889	transcription start site region 26889	1428 bp downstream