rs48488243 SNP Detail

Summary

• ID
  rs48488243
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46992925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGCCCC TCAATCAAGA
  CCCTGAACAA GAAGAGGTGG AATTGGCACC AGTGGGTGAA GGAGAAGATG GAGCTGCTGA
  CATCCAAGAT CGGATCCAGG TATGGTGGAG GATGCTGTTA CTAAGCAGAT GAGATGGAAT
  GTACCAACAG CTGTTTATCA TAATGGCAGG GGGAGGGGCG CCTAACAAAT TATCTTCTCT
  S
  GTTCTGCAGG CCCTGGGGCT TCATCTGCCA GACCCTCCAT TGGAGAGTGA GGATGAAGAT
  GAGGAGGGAG CCGCCGCATT GAGCAGCCAC AGCTCTATCC CCATGGACCC AGGTACAAAA
  ACAACCAAAG CTCATTCCTT CATTTAGAAA TAATTACCAA AAACTAGTAA GAACTGGGCA
  TGGTGGTGCA CACCTTTAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758058	NES17350948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48488243					SNP	G	G	G	G	G	G	G	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758058	NES17350948	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46992925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	423 bp distal
Klhdc3	kelch domain containing 3	1085 bp upstream
Mea1	male enhanced antigen 1	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	992 bp downstream
Rr405317	regulatory region 405317	909 bp downstream
Rr527795	regulatory region 527795	809 bp distal
Rr527796	regulatory region 527796	880 bp proximal
Tssr5136	transcription start site region 5136	1218 bp upstream
Tssr5137	transcription start site region 5137	1055 bp upstream
Tssr144872	transcription start site region 144872	1521 bp downstream
Tssr144873	transcription start site region 144873	988 bp downstream
Tssr144874	transcription start site region 144874	815 bp downstream
Tssr144875	transcription start site region 144875	within coordinates
Tssr144876	transcription start site region 144876	36 bp upstream
Tssr148367	transcription start site region 148367	1265 bp upstream
Tssr148368	transcription start site region 148368	1243 bp upstream
Tssr148369	transcription start site region 148369	1224 bp upstream
Tssr148370	transcription start site region 148370	1165 bp upstream
Tssr148371	transcription start site region 148371	1140 bp upstream
Tssr148372	transcription start site region 148372	1066 bp upstream
Tssr148373	transcription start site region 148373	94 bp upstream
Tssr148374	transcription start site region 148374	75 bp upstream