rs48490363 SNP Detail

Summary

• ID
  rs48490363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141431424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGGTTG AAAAGGCTAC
  TGAGCACACA TTCAGACTCC ATAGAAAGGA ATAGTTGATT AGTTATGGCC ATTTGAGCCA
  TAAAGAAAGG CAGCGGTACC AACTATCTGC CATTCCTACT CTAAGGAAGA AACAGATAAT
  AATTGACCAT GACAGCTTCC TGCTGTGCCT GACAGAGCTT CAGGCTTCTG GACATAGCTT
  Y
  GGGCTTCTGG ACACAGCCAT CAGAGCAATT AATGACTTTC ATTTGGCAAA GAAATGTGGG
  GTCATTTATA TTGGATGTGG TCATCAAGAA GTACAGGAAT GACAACTTAT CTTTTCAGTC
  ATCTAAAACT CATTTTCTAA CTCCAGTTTT AATAGTCTAC ATCTATTTAA AATGTCACCA
  TCTTCTGAAT TTCGTGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61091295	NES16613389	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48490363					SNP	T	T	C	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091295	NES16613389	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141431424 () rs orientation: forward

Symbol	Name	Function Class
Unc5c	unc-5 netrin receptor C	within coordinates