rs48490564 SNP Detail

Summary

• ID
  rs48490564
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTATCG ACACGAAACA
  TTACAGTCTG TTGGACACAC AGCATGATGT CACATCATAA AGAAAGGCAC CACACACCAA
  TGACCCACAT GTCCCTGTTC TGAGAATTGA ATCACCTCCA GCTTTGGAGC CTGGTACACA
  GGCACCTCTG TGTGAAAAAC AGTGAATAGT CACTTGGCTC CTTCAGTTTG AACAGTAATA
  M
  ACTCTACATA TGCATTTTCC CTTGGCCATC TCTGCAATGT ATATACCTTG GGTTATATTA
  AAAATGTTTA AACTCAGACA GGCATGGTGG CTCACACCTC TAATCCCAGC ATTAGGGTGG
  CAAAAGCAGG AATATTTCTG TGAGTTTGAG GGCAGCCAGG TCTATAAAGA GAATTCTAGA
  AATGTCAGAA CTGTTACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149179908	ENSMUSSNP5301713	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48490564					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400311 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	296 bp proximal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1417 bp downstream
Saa2	serum amyloid A 2	946 bp upstream
Tssr66700	transcription start site region 66700	945 bp upstream
Tssr66701	transcription start site region 66701	1466 bp upstream