rs48491224 SNP Detail

Summary

• ID
  rs48491224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91634002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAAAGT CACTGTGAAC
  TCCAAACCTG CTCTTTAGAG GTTGGTAGCC CTGCAAGCAG AGTTAAGTCC TGATCTACAA
  CTTGGTTACA GTACACATTG GCATGCTCGG CCAAGGAGAC GTTAGAGAAG AGCCCGTCTC
  AACCTCACTG TTACGAGAGT ATCAGCCAGG AAATCAACAG AAATCAACAG TGATTTGCCA
  R
  CTTTGAGATG TCCTGCTCAA CCGAATAGGG CTTGAGCCCT AACCTCTGGC ACAGCCCTGC
  GGACTGAGCA GCAGCTGTCT GAATCTGAGT GGCTTATGAG AGAGTAGAAT AGGACACGAG
  AGAGCAGCAG ATGCCCCCTT AGTATCCATT CGGAAGCGTT TGTCTACCAG CTCACAGCAA
  GACTCATCTT AACCAGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss61672038	NES17617433	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs48491224					SNP	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61672038	NES17617433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91634002 () rs orientation: forward

Symbol	Name	Function Class
Gm51993	predicted gene, 51993	within coordinates
Gm59627	predicted gene, 59627	within coordinates
Rr470642	regulatory region 470642	421 bp proximal
Rr470643	regulatory region 470643	650 bp proximal
Rr470644	regulatory region 470644	1061 bp proximal
Ston2	stonin 2	within coordinates
Tssr114594	transcription start site region 114594	211 bp downstream
Tssr114595	transcription start site region 114595	1556 bp upstream