rs48491320 SNP Detail

Summary

• ID
  rs48491320
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCAATC CCATGGCGTA
  TAAAAGCATC TCATCTGGCC AGGTCCTGGA ACCTTTCCTG AGATTCTGGT GAGTCGGTCA
  GCTCTGTGGG ACTCTCTCTT CTTTTCTAAA CATCTAGAAC AGTTATAGTA CAGCTACTTC
  TGTTGAGCTC TCCCTGCTCT CTCCAGAATA TGTCCTTTCC CTCACAGCCA CCCAAGAGCT
  S
  AGGGATCTCA TCTTTGCTCT TTCCCTCCAG CCCCAGGATG CCAACTTTGA ATAGGATGAA
  GACTACAACT TGTTCCCTTC TCATCTGCAT CTCCCTGCTC CAGCTGATGG TCCCAGTGAA
  TACTGATGAG ACCATAGAGA TTATCGTGGA GAATAAGGTC AAGGAACTTC TTGCCAATCC
  AGGTATGAAT GAATAGGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60458789	NES16437363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48491320					SNP	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458789	NES16437363	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663124 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	274 bp downstream
Tssr138681	transcription start site region 138681	181 bp downstream
Tssr138682	transcription start site region 138682	130 bp downstream
Tssr138683	transcription start site region 138683	100 bp downstream
Tssr138684	transcription start site region 138684	66 bp downstream
Tssr138685	transcription start site region 138685	25 bp downstream
Tssr138686	transcription start site region 138686	82 bp upstream
Tssr138687	transcription start site region 138687	123 bp upstream
Tssr138688	transcription start site region 138688	782 bp upstream
Tssr138689	transcription start site region 138689	1410 bp upstream
Tssr138690	transcription start site region 138690	1468 bp upstream
Tssr138691	transcription start site region 138691	1505 bp upstream