rs48492102 SNP Detail

Summary

• ID
  rs48492102
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52153944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATCAGG GAAAGATATC
  TAGAAAGTGG TTGAAGCAAA GCTTAAAGAA TTTAGCTTTT TATCCCACAA TGAATGTGGA
  GGTAAGAAAG GGAAGTGTGA GTGATTTTGA GGATGGAAGT TATGTTCAAA TGCTTTTGCT
  GTTGATAATT ATTGTTACTA GCAATGGGGA CCAAACACAG CTAGAGTTAG AGAGCCCAAG
  W
  GTTAGAGAAC CCTGCCTGAA ACTCCAATTT CTTATACAAT TGTGAGAAAA CAGGGCAGTT
  GGGATAAATA AAGGTAGACA TAGTAAATAA AGAGACAGGA TGAATGTTTC CAAAGTAAAA
  TCGATAAGAG TTTCAGTACG TTTGCTGACT CCTCAAGCTC CAAAGTTCAC ATTTCGCAAC
  ATAGCTAAGT ACACTGCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215763	NES15721504	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48492102					SNP	T	T	T	T	A	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215763	NES15721504	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52153944 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Gm32597	predicted gene, 32597	within coordinates
Rr516984	regulatory region 516984	within coordinates
Tssr141426	transcription start site region 141426	1118 bp upstream
Tssr141427	transcription start site region 141427	422 bp upstream