rs48492107 SNP Detail

Summary

• ID
  rs48492107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52228771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATTTGA TTTATGTAGC
  TGTAGCATGT AAAAAATAAA TTTACTGAAC TACTAATTAT TATATGTAAA TAAAATAAAA
  TTCCAGTTTA AAACATAATA GAAATTTCAT AGGTTAAATC AGTTTAATTC CATGATGCAC
  TTAAATGAGT AGAACCCATT CAGTATTTTT TTGAAATAAC ATGCAAATTG CAGCATCAAC
  Y
  GCCTTTTGCT AACCATTTCT AAAATTATTA TTGAATATCA CTTCTTGTCA CACTCTCTCT
  GGAGAAGATT AATGGTATGA TCACAGAGAC ACCAGCTGTT TCAATACTGT TTTGTATTTA
  CTGTGCTAGC TTAATAAACT ACAGATTCTC TTAGCAGCTA TAACCTCTTT TAGCTAGAAA
  CATTTCATGG GTATATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60215428	NES15718881	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	T	C		T
ss325178523	CHEV_16_52408521	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48492107					SNP	T	T	T	T	C	T	C	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215428	NES15718881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52228771 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Tssr141455	transcription start site region 141455	1672 bp upstream
Tssr141456	transcription start site region 141456	799 bp upstream
Tssr141457	transcription start site region 141457	739 bp upstream
Tssr141458	transcription start site region 141458	710 bp upstream
Tssr141459	transcription start site region 141459	697 bp upstream
Tssr141460	transcription start site region 141460	654 bp upstream
Tssr141461	transcription start site region 141461	639 bp upstream
Tssr141462	transcription start site region 141462	588 bp upstream