rs48492846 SNP Detail

Summary

• ID
  rs48492846
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55565099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAGGGG ATCTGTACAA
  GTTCAAGGCT ACCTAGCAAG TCACAGGCCA GACAAAAGCT ATGCAGTAAG ATGCTGTGCA
  AAGATGGGTG TAAGGACGGG GAGTGTAGCG CAGTCAGTAC AGTGCAGTTG ACAGAGGGCC
  TGGCTAGACC AAGAACAAAG TTTTGGGATT GATCCCCCTG CACCACATAA ACTGGGTGAT
  K
  GTATAGGCCT ATAATTTCGG CATTAGGACG ACAGATATCT CAATAAATCA ATAAACAGAA
  GGACATTTTT AAAAGCAAGA AATGTACTCA TCTGGACAAC TAGGCTCCTC TCCTGCAAGG
  GAACTACAAA CCTCGCTTTG GAGTCACCGC ATCCCCGAAG GCTCTGGCTG GCTGGCTCCT
  AACCCAGCTT GTACTTAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806175	NES17743065	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48492846					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806175	NES17743065	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55565099 () rs orientation: forward

Symbol	Name	Function Class
BC038268	cDNA sequence BC038268	1694 bp downstream
Cpgi5668	CpG island 5668	1945 bp distal
Cpgi5669	CpG island 5669	944 bp proximal
F12	coagulation factor XII (Hageman factor)	672 bp downstream
Rr480459	regulatory region 480459	1723 bp distal
Rr480460	regulatory region 480460	1176 bp proximal