rs48494217 SNP Detail

Summary

• ID
  rs48494217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:121746897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTTCTGTTGT CTTCTTTTGA TTCATCTGTA CCCAGTATCA
  CTGCTTTGGT GGATTGAGTT TCACTGTAGG AATGGCAGGA CAGTTCTTTC CTCAGGATAA
  R
  GATAAGGCTC AGTGGGGCTC AGTGGGGATG AGAAGCCCTT GTGTGGAACA ACCCACAGCA
  GTCAGAGATG CCCTCTCTCT TTGGATCTTG TAAGCAAGTT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145833549	ENSMUSSNP872784	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48494217					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:121746897 () rs orientation: forward

Symbol	Name	Function Class
Dctn5	dynactin 5	within coordinates
Gm15489	predicted gene 15489	614 bp downstream
Rr153390	regulatory region 153390	97 bp distal
Tssr68863	transcription start site region 68863	613 bp upstream