rs48494705 SNP Detail

Summary

• ID
  rs48494705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65843786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTGTAA TGGGATCTGA
  TGCCCTCTCC TGCTGTGTCT GAAGACAGCA ATGGTGTACT CATATACAGA AAATAAATAA
  ATCTTAAAAA AAAAGAAAGT ATCACTTTTG CTGATGCATA ATATACCTTC TGTTATCATG
  ATCTTCAGGG ATGTTTTCCT AAAACTCTCA AATCTCTTTC TTCATTGCAC TAAAAATACT
  Y
  GCATAGGTGG AACTCACGAC TTTTGGCAAA CGGTGAATTC AACATCTTCT CTCCTTTCTC
  CACCAGAGAA CAAGTCTACA GCCACTGGAG CATTGCCATG TGTCGCCAGG GGCCACTGGA
  GCATTGCCAT CCGTCACCAG GGGAATCCAA CCTTGGCAAG TGTCAGTGCT CAAACTGCGC
  TGACACCCGG TGGTAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417513	NES15922104	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	T	C	T
ss135254270	ENSMUSSNP4514273	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48494705					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417513	NES15922104	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65843786 () rs orientation: forward

Symbol	Name	Function Class
Rr68053	regulatory region 68053	1615 bp proximal
Rr76051	regulatory region 76051	881 bp distal
Rr76052	regulatory region 76052	within coordinates
Rr81263	regulatory region 81263	1877 bp proximal