rs48494996 SNP Detail

Summary

• ID
  rs48494996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACTCATTG GCGGATGAAC GTTTGAGCCG TTTCCATCTT
  TTGGCTGTTA GGACTGATGT TAAAACATTT GGATGCTGTG CTTCTGTCTG TGCACATGTC
  Y
  GTCCTCTTGT GGGTATTTCC TGGGTGGAAT TGCTGGTTGA AGTGACACCT CAGTGTTTAA
  CTAAGGAACT AACTACCAAG TAGCTGTACC ATTTTACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147535335	ENSMUSSNP4690345	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48494996					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	580 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1521 bp distal
Rr564564	regulatory region 564564	1372 bp distal
Rr564565	regulatory region 564565	494 bp distal
Rr564566	regulatory region 564566	1023 bp distal
Rr564567	regulatory region 564567	11 bp distal
Rr564568	regulatory region 564568	1470 bp proximal
Tssr20024	transcription start site region 20024	1341 bp downstream
Tssr20025	transcription start site region 20025	1325 bp downstream
Tssr20026	transcription start site region 20026	1174 bp downstream
Tssr20027	transcription start site region 20027	1717 bp upstream
Zfp661	zinc finger protein 661	1510 bp upstream