rs48495405 SNP Detail

Summary

• ID
  rs48495405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56918268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGCTTT TACAGACATG
  TCCAGTGTCT ATGGTGACAT TTTCTCCTTT TCACCCAGAA CTAAAATAAA CCAACCCTCA
  TGACTAAGAA TGGGTGAGAG GAGCCTAGAA CATGGCAAGG TAGCATGTGG CATTGCCAGT
  AGCGCTTAGA CAGTGTATCT TTGGACCTAA GATTTGAAAG AAGTAAGTTT TAGGGAAGAG
  Y
  GTCCAAGCAA GAACTCAGCC AGTGCACAGG CCCAGGACCT GGGACAAAGC TGAGCAGACT
  GGGCAGTTTG GACTGGCTCC TGGAGGACCC TTTAAGGGGC CCAGGGCTTT GTTTTCCCCC
  CACTCCCAGA ATGACCAGAG TGAGTGGTCT GAGGAAGAAG GAAGGATGTT GGCAGCAGGA
  CATCTTCATT ATGTCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62806700	NES17364175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48495405					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62806700	NES17364175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56918268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	969 bp distal
Cpgi9368	CpG island 9368	1967 bp proximal
Gm56912	predicted gene, 56912	304 bp downstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	1497 bp upstream
Rr340044	regulatory region 340044	467 bp distal
Rr340045	regulatory region 340045	332 bp proximal
Rr340046	regulatory region 340046	1932 bp proximal
Rr370299	regulatory region 370299	1325 bp downstream
Tssr145313	transcription start site region 145313	1352 bp downstream
Tssr148822	transcription start site region 148822	1582 bp upstream
Tssr148823	transcription start site region 148823	1553 bp upstream
Tssr148824	transcription start site region 148824	1449 bp upstream
Tssr148825	transcription start site region 148825	1434 bp upstream
Tssr148826	transcription start site region 148826	1329 bp upstream
Tssr148827	transcription start site region 148827	1297 bp upstream
Tssr148828	transcription start site region 148828	1263 bp upstream