rs48496509 SNP Detail

Summary

• ID
  rs48496509
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62246242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGTGTC GCAGCAGCAC
  CAAGCTCCGA AGTGTTTCAC CCTTCCAACC TTCCCCTCCA GGTCTAGGGA TGATCAAGAA
  GCCCTTTCTC TGCTCTCACG ACCATTCCCA CGCAGTGTTC AGATCTGCGA CCGCGCCCTC
  CAGCTGGCCC GTAGGGCGGC CGCCCGCGCT CCTGCATTCT TGCACTCAGG GTCTGGACAG
  S
  CAGCTCAGGT GTGCGCGTCC CGTTTACAAT CACTGAGCGC ACTCCGGGAA GGCAGGGGCG
  GGAACTCCTG GGCGCCTCGG TGCGAGCTTC CCCGGCGTGC TGGGGCGGGG CGTAGCGCGG
  GGGCGGGGCC GGCGCCGCGG GCCTCTGCTG TCCCAGGCTG AGCGGTTGTC TCCGCGCTTT
  AGTAAGGACC CAGGCCACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60415941	NES15920341	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48496509					SNP	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415941	NES15920341	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62246242 () rs orientation: forward

Symbol	Name	Function Class
9330121J05Rik	RIKEN cDNA 9330121J05 gene	within coordinates
Arhgef26	Rho guanine nucleotide exchange factor 26	within coordinates
Cpgi13214	CpG island 13214	within coordinates
Rr77681	regulatory region 77681	within coordinates
Tssr29350	transcription start site region 29350	120 bp upstream
Tssr29351	transcription start site region 29351	203 bp upstream
Tssr29352	transcription start site region 29352	752 bp upstream
Tssr29353	transcription start site region 29353	1225 bp upstream