rs48496578 SNP Detail

Summary

• ID
  rs48496578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:110358048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTCATC CAAGAAAAAA
  AGAGCAAGAG GAAGAAAAAC AGAAATGGCA AGAAGTGAGG GTTGGATTGA GAAGGGCCTC
  TGACCTCTCC ACTAAGTGAG AGTCCCCTCT CCTATTTCCT TCCTGCCTCC TTCCAAAAAG
  ATACTGCCTT GGAAGATGAG TTCAATGACA ACAGTTGATA ACTGTGCCCC ATCACAACCA
  Y
  GTACATTCTT GCAGCTTCCC AATAGCCAAA TGAAGTTGGA GCAAATGAAA TTGCACATGG
  ATGTACCCAT CGGGGTTGGG CTCACCACCA TCAGTTGATC TATGCATTGT ACCCATATAT
  GGTTTTCTGT GATGGTCTCT ATTCATGGTA AATAGAGGCT TCTTTGATGA GAGGTGGTAG
  CCAGACTTAT CTGTGGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss61312783	NES16918338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		C	C
ss323463792	CHEV_10_109959243	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs48496578					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61312783	NES16918338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:110358048 () rs orientation: forward

Symbol	Name	Function Class
D10Mit150	DNA segment, Chr 10, Massachusetts Institute of Technology 150	1044 bp proximal