rs48496589 SNP Detail

Summary

• ID
  rs48496589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45215687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTATAGT GTAAGCCTAA
  TTATTCTGCA TCTTTTGTGT GAGCAATCTT TTCTGTTTTG TGTTTCTCAG AAATCATCTG
  ACAGTATCCT CCCCCCCTCC CTTCAGCACC CCTCTATGGG TACCCTTTAC CTATCAGAAG
  CAACAGGCAG GGCACAGTTC CCAGAGCCTG TTGTTTAGGA AAAAAAAAAT CCATTTTTTT
  Y
  CCCAAAAAGC AGAGAGGAGA CTTGCCCCCT CCCTAAATTG CCTAGTTAGA AAACCTATTA
  AAAATGCAAA CTAGGAACTC AGAATCCATA AATAAGATAA TCAGAGAGTG ACTGTCGGAA
  AGGCCACAGG GTTCACCTGA CAGACCTGGA AAATTTGTTT AGAAAAAATG GATATAATTT
  CCCCAGGAGT GTCAACCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148077774	ENSMUSSNP4739723	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325166228	CHEV_16_45395437	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48496589					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45215687 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr141233	transcription start site region 141233	1805 bp downstream