rs48496616 SNP Detail

Summary

• ID
  rs48496616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCTGTC AGGCTTTGGG
  ACAGAGACTC CAGGGCTTCC TGGAAGGAAA GGTCTTGGTC ATGCCCAGGG TCCCGTCTCT
  GGGTAGATAC TGTTCACAGC CATCTGCACA TGTTCTCACC CATCGGGATG CATCCAGCTG
  CGAGTTAAGG AGGGGCTTCA TGGACTCCGG GGGCAGGGAC GGCAGCAGCT CAGAGATCTG
  R
  TGGGAGAATC ATTAGAAGCC AGTGAGACAC AAACAGGATG GACCTTCTCA GGGGCTCTAG
  TTTCCCTCAA CCCTGTGAAC CTGGGTCTCA GAAGTGTTAA CGACTTTTGC CAACTTGACA
  ATTGCTATTG GATATAGGCG TGCCCAGCCC ACTCTGGGCC TGGGCTGTAT AAGAGGTAGC
  TGAACAAGCC GGGAGGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60987110	NES16140783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48496616					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987110	NES16140783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854122 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	983 bp upstream
Cpgi18740	CpG island 18740	602 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1756 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	736 bp downstream
Rr400219	regulatory region 400219	1415 bp upstream
Rr644490	regulatory region 644490	469 bp distal
Rr644491	regulatory region 644491	493 bp proximal
Rr644492	regulatory region 644492	1005 bp proximal
Rr644493	regulatory region 644493	1476 bp proximal
Rr644494	regulatory region 644494	1499 bp proximal
Rr644495	regulatory region 644495	1624 bp proximal
Tssr65599	transcription start site region 65599	946 bp upstream
Tssr65600	transcription start site region 65600	974 bp upstream
Tssr65601	transcription start site region 65601	1047 bp upstream
Tssr71610	transcription start site region 71610	900 bp downstream
Tssr71611	transcription start site region 71611	925 bp downstream
Tssr71612	transcription start site region 71612	1020 bp downstream
Tssr71613	transcription start site region 71613	1239 bp downstream
Tssr71614	transcription start site region 71614	1266 bp downstream
Tssr71615	transcription start site region 71615	1475 bp downstream