rs48496799 SNP Detail

Summary

• ID
  rs48496799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40547732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCTGGC TTTGGTTCTC
  AGCACCCACA TGGTGGCTCA CATGACCATT GTGACTCTAG TTCCTTGGGA TTCAAAGCCC
  TCTTCTGGAC CCCCTAGGCA CTGGGAACAC ATATGGAGCA TAGGCATGCA CACAGGCAAA
  TACTCATATA CATAAAATAT AAATTAACCA CCCATATAAA CCATCAGTGA CTCCCTGTGC
  Y
  GATAGTAGAT CCAAACTCCT CAGCCGCCTG TTTTTCAAAC CAACTGTGAT TGTCCCATTT
  CTTTTTTTTG GTTTTTCGAG ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA
  CTCTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCTACCT GCCTCTGCCT CCCAAGTGCT
  GGGATTAAAG GCGTGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273176	NES16893950	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	C	C	C	T	C	C	T	T
ss147068172	ENSMUSSNP1591795	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48496799					SNP	T	T	C	C	C	T	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273176	NES16893950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40547732 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Tssr93028	transcription start site region 93028	1333 bp upstream