rs48496968 SNP Detail

Summary

• ID
  rs48496968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30731373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC AAGAGCTTCT CTTCTTTCTT
  R
  TGACGTATTT TCCCCTTATT TCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148696735	ENSMUSSNP2209064	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322138557	CHEV_7_31816967	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48496968					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30731373 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	780 bp downstream
Rr644976	regulatory region 644976	1010 bp distal
Rr644977	regulatory region 644977	within coordinates
Rr644978	regulatory region 644978	1545 bp proximal
Tssr65829	transcription start site region 65829	905 bp upstream