rs48497520 SNP Detail

Summary

• ID
  rs48497520
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98886547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAAATATGAC AGCAGTAGGA ATGCGCGAAG TGGGGCGTAG
  TGAGACAGGA GACACAACCC GGGTCAATTT AGGTGGGCTT TTTTTTTTTT TTTTTTTGGC
  A
  CTTACAGGGT AAGCAACCGG ATGGTTGCTA GGCAACTGCA TCTCTCGTTA GCACGGAGGA
  CCCTGTCCGA GGTGTCTAAG TCACTACCTG TTTCTTTTAA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137987683	ENSMUSSNP622313	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48497520					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98886547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	120 bp proximal
Rr403444	regulatory region 403444	within coordinates
Rr470976	regulatory region 470976	within coordinates
Rr470977	regulatory region 470977	122 bp proximal
Rr470978	regulatory region 470978	1488 bp proximal
Tssr114655	transcription start site region 114655	243 bp upstream
Tssr114656	transcription start site region 114656	279 bp upstream
Tssr114657	transcription start site region 114657	332 bp upstream
Tssr114658	transcription start site region 114658	356 bp upstream
Ttc8	tetratricopeptide repeat domain 8	286 bp upstream