rs48497558 SNP Detail

Summary

• ID
  rs48497558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24034921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGTCAGC AAGGCGAGGC
  AGATCACATT CTAGATCTCC AGCTACTAGG GGCAGATCCC GATCTAGAAC ACCAGCTAGA
  AGGGGTAGGT CTCGGTCCAG AACACCTGCC AGGCGAAGAT CACGATCCAG AACACCTGCC
  AGGCGTAGGT CTCGGTCTAG AACACCAGCT CGCAGGGGCA GGTCCAGATC AAGAACACCC
  R
  CTCGCCGCAG GTCTAGGACA CGATCACCAG TTCGAAGGAG GTCTCGGAGT AGATCCCAAG
  CTAGGAGAAG TGGTAGGTCT AGGTCCAGAA CACCAGCCAG GAGAAGTGGC AGGTCAAGAT
  CTAGAACACC AGCCAGGAGA GGGAGGTCCC GGTCTAGAAC GCCAGCCAGA AGAAGCGCTC
  GATCTCGGTC TAGAACGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327508	CHEV_17_23952914	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48497558					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24034921 () rs orientation: forward

Symbol	Name	Function Class
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142965	transcription start site region 142965	756 bp downstream
Tssr142966	transcription start site region 142966	709 bp downstream
Tssr142967	transcription start site region 142967	663 bp downstream
Tssr142968	transcription start site region 142968	642 bp downstream
Tssr142969	transcription start site region 142969	108 bp upstream
Tssr142970	transcription start site region 142970	137 bp upstream
Tssr142971	transcription start site region 142971	205 bp upstream
Tssr142972	transcription start site region 142972	250 bp upstream
Tssr142973	transcription start site region 142973	264 bp upstream
Tssr142974	transcription start site region 142974	301 bp upstream
Tssr142975	transcription start site region 142975	325 bp upstream
Tssr142976	transcription start site region 142976	353 bp upstream
Tssr142977	transcription start site region 142977	411 bp upstream
Tssr142978	transcription start site region 142978	456 bp upstream
Tssr146670	transcription start site region 146670	677 bp upstream